Journal: Genes

Article Title: Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

doi: 10.3390/genes12091421

Figure Lengend Snippet: Genome properties of Corallococcus species.

Article Snippet: Corallococcus sp. strain EGB (CCTCC No. M2012528) was previously isolated from saline soil, and was cultivated in VY/4 medium (1% yeast cells and 1% CaCl 2 , PH 7.0, w/v ).

Techniques:

Journal: Genes

Article Title: Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

doi: 10.3390/genes12091421

Figure Lengend Snippet: Circular representation of the complete genome of Corallococcus sp. strain EGB. The outermost circle is the coordinate of the genome position. From the outside to the inside, the first circle represents COG annotation gene distribution of the forwarding strand, colored according to cluster; the second circle illustrates COG annotation of the reverse strand; the third circle depicts the ncRNA distribution of the forwarding strand; the fourth circle represents the ncRNA distribution of the reverse strand; the fifth circle illustrates the repeat; the sixth circle depicts the GC content; the seventh circle denotes the GC skew.

Article Snippet: Corallococcus sp. strain EGB (CCTCC No. M2012528) was previously isolated from saline soil, and was cultivated in VY/4 medium (1% yeast cells and 1% CaCl 2 , PH 7.0, w/v ).

Techniques:

Journal: Genes

Article Title: Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

doi: 10.3390/genes12091421

Figure Lengend Snippet: ANI and dDDH values for pairwise comparisons between Corallococcus species and M. xanthus DK1622.

Article Snippet: Corallococcus sp. strain EGB (CCTCC No. M2012528) was previously isolated from saline soil, and was cultivated in VY/4 medium (1% yeast cells and 1% CaCl 2 , PH 7.0, w/v ).

Techniques:

Journal: Genes

Article Title: Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

doi: 10.3390/genes12091421

Figure Lengend Snippet: Comparative analysis of proteins between strain EGB and other Corallococcus species. ( A ) Number of protein families shared by different species. ( B ) Proportion of proteins enriched in the clusters of orthologous groups (COG) categories in the core, dispensable, and unique proteome. A, RNA processing and modification; B, chromatin structure and dynamics; C, energy production and conversion; D, cell-cycle control, cell division, chromosome partitioning; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; G, carbohydrate transport and metabolism; H, coenzyme transport and metabolism; I, lipid transport and metabolism; J, translation, ribosomal structure and biogenesis; K, transcription; L, replication, recombination and repair; M, cell-wall/membrane/envelope biogenesis; N, cell motility; O, posttranslational modification, protein turnover, chaperones; P, inorganic ion transport and metabolism; Q, secondary metabolites biosynthesis, transport and catabolism; R, general function prediction only; S, function unknown; T, signal transduction mechanisms; U, intracellular trafficking, secretion, and vesicular transport; V, defense mechanisms; W, extracellular structures; X, mobilome: prophages, transposons; Z, cytoskeleton.

Article Snippet: Corallococcus sp. strain EGB (CCTCC No. M2012528) was previously isolated from saline soil, and was cultivated in VY/4 medium (1% yeast cells and 1% CaCl 2 , PH 7.0, w/v ).

Techniques: Modification, Control, Membrane, Transduction

Journal: Genes

Article Title: Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior

doi: 10.3390/genes12091421

Figure Lengend Snippet: Comparison of chitinases and proteases. ( A ) Phylogenetic tree of chitinases derived from strain EGB, C. coralloides , C. praedator , and M. xanthus . ( B ) Comparison of protease numbers among Corallococcus species.

Article Snippet: Corallococcus sp. strain EGB (CCTCC No. M2012528) was previously isolated from saline soil, and was cultivated in VY/4 medium (1% yeast cells and 1% CaCl 2 , PH 7.0, w/v ).

Techniques: Comparison, Derivative Assay

Journal: Microbiome

Article Title: A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community

doi: 10.1186/s40168-020-00824-x

Figure Lengend Snippet: Effects of strain EGB solid culture application on the disease incidences of cucumber Fusarium wilt, and quantities of strains FOC and EGB in soil surrounding cucumber roots

Article Snippet: Fusarium oxysporum f. sp. cucumerinum (FOC) (ACCC 30220), Corallococcus sp. strain EGB (CCTCC M2012528), and Escherichia coli DH10B (ThermoFisher Scientific, USA) were maintained in the laboratory at – 80 °C with 15.0% glycerol (Sigma-Aldrich, Japan) as a cryoprotectant.

Techniques:

Journal: Microbiome

Article Title: A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community

doi: 10.1186/s40168-020-00824-x

Figure Lengend Snippet: Sampling strategy ( a ) and relative spatiotemporal abundances of Corallococcus ( b ) and Fusarium ( c ). I, Strain EGB inoculation site; R, the sampling site surrounding the roots; M, a site between the cucumber root and inoculation site; NT, no FOC or strain EGB solid culture; EGB, strain EGB solid culture only; EGBFOC, both FOC and EGB solid culture; FOC, FOC only. Each sample had 3 repeats, and the bars represent the standard deviations of averages from three replicates. Values designated with the same letters were not significantly different ( p ≤ 0.05) according to Duncan’s test

Article Snippet: Fusarium oxysporum f. sp. cucumerinum (FOC) (ACCC 30220), Corallococcus sp. strain EGB (CCTCC M2012528), and Escherichia coli DH10B (ThermoFisher Scientific, USA) were maintained in the laboratory at – 80 °C with 15.0% glycerol (Sigma-Aldrich, Japan) as a cryoprotectant.

Techniques: Sampling